MRIQC: individual T1w report

Summary

  • BIDS filename: sub-6035_ses-2_T1w.
  • Date and time: 2023-08-10, 21:05.
  • MRIQC version: 0.16.1.
  • Workflow details:
    • Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)
Background noise

Other

cjv0.553827238628247
cnr2.4661976489989623
efc0.6023710967305362
fber2853.302068559008
fwhmavg2.8852733333333336
fwhmx2.84512
fwhmy3.0391
fwhmz2.7716
icvscsf0.15414084031257447
icvsgm0.4664732541522907
icvswm0.37938590553513485
inumed1.3556642532348633
inurange0.3411019444465637
qi10.0
qi20.007612624830202416
rpvecsf35.450515594532874
rpvegm12.678940364338773
rpvewm17.75274341247813
sizex176
sizey256
sizez256
snrcsf2.3255024251579965
snrgm7.19179006480623
snrtotal8.606896488837696
snrwm16.30339697654886
snrdcsf157.17147019443394
snrdgm71.08080943390569
snrdtotal109.38770244342972
snrdwm99.91082770194953
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1604.6645982040209
summarybgmad6.557211023495949
summarybgmean11.51660518533469
summarybgmedian8.845543250441551
summarybgn2137980.0
summarybgp050.0
summarybgp9526.536629751324654
summarybgstdv11.926092332898504
summarycsfk-0.8755135494637143
summarycsfmad582.8351798191975
summarycsfmean1393.4409806370043
summarycsfmedian1573.1174946706742
summarycsfn14248.0
summarycsfp05202.7302119260654
summarycsfp952291.710149588436
summarycsfstdv676.4397541929019
summarygmk-0.23136562793999937
summarygmmad103.14997340807088
summarygmmean715.8836807527705
summarygmmedian711.4425074569881
summarygmn37115.0
summarygmp05560.444547995925
summarygmp95882.6264502331614
summarygmstdv98.92292693233614
summarywmk0.5863003798282689
summarywmmad56.66102858764448
summarywmmean1000.5530626726315
summarywmmedian1000.000004902482
summarywmn189976.0
summarywmp05901.1680697388947
summarywmp951103.1413072906435
summarywmstdv61.336749293783555
tpmoverlapcsf0.12120801955461502
tpmoverlapgm0.39250704646110535
tpmoverlapwm0.47518208622932434
wm2max0.3726506026069266
AcquisitionDuration318.417
AcquisitionMatrixPE256
AcquisitionNumber1
AcquisitionTime13:27:25.495000
BaseResolution256
BodyPartExaminedBRAIN
CoilCombinationMethodAdaptive Combine
CoilStringHeadNeck_64
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20220720
Dcm2bidsVersion2.1.7
DeviceSerialNumber67034
DwellTime6.1e-06
EchoTime0.0024
FlipAngle9
ImageCommentsProject:earlypsychosis
ImageOrientationPatientDICOM[0.0193928, 0.998574, -0.0497402, -0.0687106, -0.0483008, -0.996467]
ImageType['ORIGINAL', 'PRIMARY', 'M', 'NONE']
ImageTypeText['ORIGINAL', 'PRIMARY', 'M', 'NORM', 'DIS2D']
ImagingFrequency123.262
InPlanePhaseEncodingDirectionDICOMROW
InstitutionAddressFairbanks 710,Chicago ,Chicago,US,60611
InstitutionNameNU Tuna
InversionTime0.9
MRAcquisitionType3D
MTStateTrue
MagneticFieldStrength3
ManufacturerSiemens
ManufacturersModelNameMAGNETOM Prisma Fit
MatrixCoilModeGRAPPA
ModalityMR
NonlinearGradientCorrectionTrue
ParallelAcquisitionTechniqueGRAPPA
ParallelReductionFactorInPlane2
PartialFourier1
PatientPositionHFS
PercentPhaseFOV100
PercentSampling100
PhaseResolution1
PixelBandwidth320
ProtocolNameMPRAGE_SAG_1mm_iPAT2
PulseSequenceDetails%SiemensSeq%\tfl
PulseSequenceName*tfl3d1_16ns
ReceiveCoilActiveElementsHC1-7;NC1,2
ReceiveCoilNameHeadNeck_64
ReconMatrixPE256
RefLinesPE24
RepetitionTime2.3
ScanOptionsIR
ScanningSequenceGR\IR
SequenceVariantSK\SP\MP
SeriesDescriptionMPRAGE_SAG_1mm_iPAT2
SeriesNumber10
ShimSetting[2630, 5354, -7431, 6, 56, -644, 183, -282]
SliceThickness1
SoftwareVersionssyngo MR XA30
StationNameMRC35427
TxRefAmp292.377
md5sum38f256569fe9c823b32c140b45e00375
softwaremriqc
version0.16.1
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For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.